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TransAT

Use transatui.py to compile initialconditions.cxx and prepare simulation files on login node.

Example job script to run TransAT:

transat_example.sh
#!/bin/bash
 
###
### parallel job script example for TransAT
###
 
## name of your job
#SBATCH -J <yourcasenamehere>
 
## system error message output file
#SBATCH -e <yourcasenamehere>.%j.stderr
 
## system message output file
#SBATCH -o <yourcasenamehere>.%j.stdout
 
## send mail after job is finished
#SBATCH --mail-type=end
#SBATCH --mail-user=first.last@lut.fi
 
## a per-process (soft) memory limit
## limit is specified in MB
## example: 1 GB is 1000
#SBATCH --mem-per-cpu=1900
 
## how long a job takes, wallclock time d-hh:mm:ss
#SBATCH -t 1-12:00:00
 
##the number of processes (number of cores)
## number of cores
#SBATCH -n 4
 
##name of queue 
#SBATCH -p phase2
 
## load modules
module load TransAT/openmpi-1.6.5-gcc/5.2
module load petsc/3.2-p7
 
##change to calculation directory
CALCDIR=/home/<yourusername>/<yourcasename>
cd $CALCDIR
 
## Run initialconditions
srun $CALCDIR/transatmbinitialDP
 
## Run calculation
srun transatmbDP
 
/opt/webdata/webroot/wiki/data/pages/en/hpc/software/transat.txt · Last modified: 2015/05/29 18:35 by vrintala
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